Thank you for your input, I'm indeed looking at things in a very simplified manner, so as you had suggested I'm just leaving topography as a perfectly flat plane. We're not using this for a specific project, but instead trying to better understand a few general behaviors so we can best inform what our upper and lower boundaries should be as we look at optimizing a site per a client's criteria.
Currently I'm assuming a 72 module tracker, and using the parameter file to vary the pitch, and total number of trackers. I'm not sure that tracker shading is a minor issue, are we referring to the same thing? I'm thinking of the module to module shading during low sun angles as tracker pitch starts getting very close when I talk about tracker shading.